Scaffold JGI26079J46598_1004818

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1004818
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4690
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031863	Metagenome / Metatranscriptome	181	Y
F053967	Metagenome / Metatranscriptome	140	N
F056582	Metagenome / Metatranscriptome	137	Y
F071664	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_100481810	F053967	N/A	MVKFDPTNELTEEQLEELGNKNFDDFLDYLDQKAKHLKQFTKPLSSYHTKRYASMSAQTDGKEFTKEEMQKAGEIGKKNEIIAAAKVADKLKEFDKKXPKYTDEGIKNIKTNRSQWFD*
JGI26079J46598_10048186	F071664	N/A	MIKKIKSKLLTYLFTDWVKTETDLETLKLTKQMLNNREIEVTGIKPVLGFRSHTTNTEIQ
JGI26079J46598_10048187	F031863	N/A	MYWSRDMIEMRGDLYVVKRKFRIENFEKVMQHFGANEVCENYHCETVLKGKDGFYYLCDKVDDAKII*
JGI26079J46598_10048189	F056582	GGA	MARFKTYKIDKTPIDSLPEMVTISKKIKGELFEKKFISIEKAKAWIEFGAANKLIARGAKKVKGELSSIGLISDTAW*