Basic Information | |
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Taxon OID | 3300003216 Open in IMG/M |
Scaffold ID | JGI26079J46598_1004818 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4690 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (14.29%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031863 | Metagenome / Metatranscriptome | 181 | Y |
F053967 | Metagenome / Metatranscriptome | 140 | N |
F056582 | Metagenome / Metatranscriptome | 137 | Y |
F071664 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI26079J46598_100481810 | F053967 | N/A | MVKFDPTNELTEEQLEELGNKNFDDFLDYLDQKAKHLKQFTKPLSSYHTKRYASMSAQTDGKEFTKEEMQKAGEIGKKNEIIAAAKVADKLKEFDKKXPKYTDEGIKNIKTNRSQWFD* |
JGI26079J46598_10048186 | F071664 | N/A | MIKKIKSKLLTYLFTDWVKTETDLETLKLTKQMLNNREIEVTGIKPVLGFRSHTTNTEIQ |
JGI26079J46598_10048187 | F031863 | N/A | MYWSRDMIEMRGDLYVVKRKFRIENFEKVMQHFGANEVCENYHCETVLKGKDGFYYLCDKVDDAKII* |
JGI26079J46598_10048189 | F056582 | GGA | MARFKTYKIDKTPIDSLPEMVTISKKIKGELFEKKFISIEKAKAWIEFGAANKLIARGAKKVKGELSSIGLISDTAW* |
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