Scaffold JGI26079J46598_1002000

Overview

Basic Information

• Taxon OID: 3300003216
• Scaffold ID: JGI26079J46598_1002000
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7973
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065434	Metagenome / Metatranscriptome	127	Y
F071292	Metagenome / Metatranscriptome	122	N
F085783	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26079J46598_10020001	F065434	N/A	QIVWLQQIRNQNWLKLEDSEMINSILYRTDYDEDQKLRLNVLRXTYIXXKXAELX*
JGI26079J46598_100200012	F071292	N/A	MEIFIVIAFNKADFYPVGVCDNLVLAKQYAQREFKERAKSHRVYVYKKMMNAPQMMEDKIVYKL*
JGI26079J46598_100200015	F085783	N/A	MIKWFRTNRTLRKLLNKKQEEIDNLRIDWFEKRKEISELERELQLARRMWDETDKTKRY*