NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25153J46596_10000740

Scaffold JGI25153J46596_10000740


Overview

Basic Information
Taxon OID3300003215 Open in IMG/M
Scaffold IDJGI25153J46596_10000740 Open in IMG/M
Source Dataset NameArabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20002
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location NameUniversity of North Carolina, USA
CoordinatesLat. (o)35.9082Long. (o)-79.0499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002851Metagenome / Metatranscriptome526Y

Sequences

Protein IDFamilyRBSSequence
JGI25153J46596_1000074022F002851AGGAGMRSLIETAAVIAACGSAIFWFMSAMCRLPDAKPGFDEEQVAELSKALRKMNRRNFWAAGLMGVTALLSASGRFIGFFGL*

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