Scaffold JGI25406J46586_10015059

Overview

Basic Information

• Taxon OID: 3300003203
• Scaffold ID: JGI25406J46586_10015059
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3270
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081908	Metagenome / Metatranscriptome	114	Y
F084448	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25406J46586_100150592	F084448	GGAGG	MSNFADGLFPEWLSFVMLLPFLMLGFGLLFISRAFTDKGDARQEAEAQDQDQSRVVVALPDRTQQPLYRVHQQIQASARPPPKAEPDEPTRASGGRPRRRRHHGTTTRLELRR*
JGI25406J46586_100150593	F081908	AGGA	VLAPLAHYGGLDETAVIWVPLVLVAGLWWIMRGGDPKEGDEPPTEDTR*