Scaffold JGI26064J46334_1018148

Overview

Basic Information

• Taxon OID: 3300003185
• Scaffold ID: JGI26064J46334_1018148
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1419
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -38.0018
  • Long. (^o): -44.9985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F029129	Metagenome / Metatranscriptome	189	Y
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26064J46334_10181482	F001479	AGGAG	MSKEMLFLCDVYDAWLDENDLPHRCASDILYGQDAMALTTNQKYWLESFISTWDIIAEVC
JGI26064J46334_10181484	F029129	GGAGG	MTKKTETKKFIIEVIGEQIKVNKYGDKLHSLIDDLGWEYQRMGLSGRETYDEICHLLNMIPEDEVYMEI*
JGI26064J46334_10181485	F058219	GAG	MKISSEKQLKRDLKYLKKHLDDDKEINQVLEHIDKVGIGSAEYFCEEFVFIPDGETPEQVARLHDPLYFDISEFNYHNWEGN*