Scaffold JGI26064J46334_1009157

Overview

Basic Information

• Taxon OID: 3300003185
• Scaffold ID: JGI26064J46334_1009157
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2125
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -38.0018
  • Long. (^o): -44.9985
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F002883	Metagenome / Metatranscriptome	523	Y
F006348	Metagenome / Metatranscriptome	375	Y
F008889	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26064J46334_10091574	F006348	GGAGG	MNKFYIVEDIRFDPKFKTEEEIKELEWKQFNGLGVWSSEGRTEDERINNLWEKVQDYMGVYLTSLEYCNNRPHPLTAFK*
JGI26064J46334_10091575	F008889	AGGAG	MYTTEQFEKDVEGLRALIKMCDDLEKEENEKADRLIKQINGENAYYWRAY*
JGI26064J46334_10091578	F001419	N/A	MSIDYNEILKCYDGVDDIHASTSFEFGLMNDLYYQLFYNYDRN*
JGI26064J46334_10091579	F002883	N/A	MSTLHHEDMLLEIFDEVQENFPYLDEEKQIEIANNRFQELCQ*