Scaffold Ga0052186_10059617

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052186_10059617

Scaffold Ga0052186_10059617

Overview

Basic Information
Taxon OID	3300003154 Open in IMG/M
Scaffold ID	Ga0052186_10059617 Open in IMG/M
Source Dataset Name	Anode biofilm microbial communities from J. Craig Venter Institute, USA, in microbial fuel cells
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1495
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Bioreactor → Bioreactor Microbial Community From Anode Biofilm In Microbial Fuel Cells

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040164	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052186_100596172	F040164	GGA	MEVEFALDEADLVALARHHMEHSPAIRRRYRIRWIGVSLGVALMGALLYVFLALKAPAIYLCASAAFFLVFYPYYYRWLVARTMHRIVGARLNPQALAARTLRTTPEGLEMVGGGLTTTRTWERINGIEVMPERAFVAIDGEYAIVLPRLRLGDETYQRLIETIRRSAGLSS*

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