NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052192_1004136

Scaffold Ga0052192_1004136


Overview

Basic Information
Taxon OID3300003153 Open in IMG/M
Scaffold IDGa0052192_1004136 Open in IMG/M
Source Dataset NameMarine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2887
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine → Marine Microbial Communities From Deep-sea Hydrothermal Vent Plumes In The Guaymas Basin

Source Dataset Sampling Location
Location NameGuaymas Basin, Gulf of mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F007055Metagenome / Metatranscriptome359Y
F007771Metagenome / Metatranscriptome345Y
F010477Metagenome / Metatranscriptome303Y
F026028Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0052192_10041364F007055GAGMTVIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGAGESEMRSRYGTQVLDHQDNKPDKDYMKKHRPAHREYPTRIYKNHGGWMVCVTCDLPDCVSQL*
Ga0052192_10041366F026028AGGALLKENGMSICSNCYHRIKHKKAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVADGTWMVMRSFPKITEEEDGLPTALTDKQFGTT*
Ga0052192_10041367F010477N/AMKIYVQIRYLVFIPYLIFIGMMGGNILAESIVVGLALAIYDFFFDNDG*
Ga0052192_10041368F007771AGGMLHHSATKLFPRRMKYVSIKLHLKHYVFDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMSELTFQRGQMCWKKQKVDYKSGDDYYRSPHEVEANGLERWLQLGYTATWNKIEEENG*
Ga0052192_10041369F000615GAGMCRLRXFYXCSDGRMGXAEHVMRYEDDIASFIKHWKNWWSNGDHR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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