NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052192_1002368

Scaffold Ga0052192_1002368


Overview

Basic Information
Taxon OID3300003153 Open in IMG/M
Scaffold IDGa0052192_1002368 Open in IMG/M
Source Dataset NameMarine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2720
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine → Marine Microbial Communities From Deep-sea Hydrothermal Vent Plumes In The Guaymas Basin

Source Dataset Sampling Location
Location NameGuaymas Basin, Gulf of mexico
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F016675Metagenome / Metatranscriptome245Y
F084346Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0052192_10023682F016675AGGAGMKNFEVDYETTLPPWHIGHEKIEAEDLDTVKRMFHSKHEAARLRKITEVLFVAPL*
Ga0052192_10023684F084346GAGMTFQTIRPRYQVETSKEQSMLSDKQQAEDIYQKYVNQKIPCELFLNGQLQKEYKPLI*
Ga0052192_10023686F000615GAGVRRNQNNIVSGLERPVNIMCRIRSFYECSDGTMGFAEMVVSYDEDIAGLIRHWGTGGRMVITEHVEMTV*

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