Scaffold Ga0052192_1002030

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052192_1002030

Scaffold Ga0052192_1002030

Overview

Basic Information
Taxon OID	3300003153 Open in IMG/M
Scaffold ID	Ga0052192_1002030 Open in IMG/M
Source Dataset Name	Marine microbial communities from deep-sea hydrothermal vent plumes in the Guaymas Basin
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2948
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Marine → Marine Microbial Communities From Deep-sea Hydrothermal Vent Plumes In The Guaymas Basin

Source Dataset Sampling Location
Location Name	Guaymas Basin, Gulf of mexico
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052192_10020303	F001334	N/A	MMKFKEYLQLNADDSIEQVMDGEWILKSRTTWKATDDEDNKIEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIYPQPSN*
Ga0052192_10020304	F003285	GAGG	MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNELSENIGRLLAGQDLHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTEAKIDSDISLLNKKVDSLEKWRWITIGIATAIAWLLTNIIPKFLNN*

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