Scaffold Ga0052254_1007447

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052254_1007447

Scaffold Ga0052254_1007447

Overview

Basic Information
Taxon OID	3300003152 Open in IMG/M
Scaffold ID	Ga0052254_1007447 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Loktak Lake, India
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	National Environmental Engineering Research Institute, India
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1218
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment → Sediment Microbial Communities From Loktak Lake India

Source Dataset Sampling Location
Location Name	ILoktak Lake, Imphal, India
Coordinates	Lat. (^o)	24.562571	Long. (^o)	93.815303	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002749	Metagenome / Metatranscriptome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052254_10074472	F002749	GGAGG	VHTNLVVIFNFIISQWSLSPQAFKDAVLYAALFKSVLAVLWWTMRVLVRKFPASEAASGLQVLLTNRVAKLVVLVLDVTLIDVFLFFAGVALLDLCRGFSIFSLWTAALFSFLLAYMVLVAHWDIKRYWTRC*

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