NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052235_1053967

Scaffold Ga0052235_1053967


Overview

Basic Information
Taxon OID3300003147 Open in IMG/M
Scaffold IDGa0052235_1053967 Open in IMG/M
Source Dataset NamePlanktonic microbial communities from North Pacific Subtropical Gyre
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4494
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre, Hawaii
CoordinatesLat. (o)22.887959Long. (o)-158.027466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012125Metagenome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0052235_10539675F012125N/AMSDTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFLIIFMFLWFD*

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