Scaffold Ga0052235_1051692

Overview

Basic Information

• Taxon OID: 3300003147
• Scaffold ID: Ga0052235_1051692
• Source Dataset Name: Planktonic microbial communities from North Pacific Subtropical Gyre
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1961
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre, Hawaii
• Coordinates
  • Lat. (^o): 22.887959
  • Long. (^o): -158.027466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F024888	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10516921	F000615	N/A	VSGLERPENIMCRIRSFYECSDGTLGWTEMVLSYEDDITGMIKHLGKGGRMVTTEHIDLV
Ga0052235_10516922	F001048	N/A	MKIKSTKQFWWRFNHLKRNGGEITVTDRTTEMDVKDFNRIESLVHKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS*
Ga0052235_10516923	F024888	GGAG	MNLDKIDLKNIHKIVGEMVGAIQKKEMEGKTPDEFAQERGFSDWMEYAAWSRHTGGDYQMMEYALKAKWKEQDPEEFARQKKIQSDQRTREHSYIGVLTTSTKKNKKKYETVHKSKFTAEELEVIYDERGVGGEPVEYTW*