NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052235_1049422

Scaffold Ga0052235_1049422


Overview

Basic Information
Taxon OID3300003147 Open in IMG/M
Scaffold IDGa0052235_1049422 Open in IMG/M
Source Dataset NamePlanktonic microbial communities from North Pacific Subtropical Gyre
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2370
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre, Hawaii
CoordinatesLat. (o)22.887959Long. (o)-158.027466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000060Metagenome / Metatranscriptome2944Y
F006509Metagenome / Metatranscriptome371Y

Sequences

Protein IDFamilyRBSSequence
Ga0052235_10494221F006509N/ASGVVATDVTGVGTGRHSLSACEYGGDKGLFGFGHDGAAQAITNLVSNSGVVATDTTGVGTGRNWIGACSFGEDKGIFAFGHDDSDEVSMSNLVSNVGVVATDTTGVGTARRRLAGCEYGSDKGIFGFGHTGSVTGVTNLVSNVGVVATDVTAVGTARQSVGACKYGGDKGIFGYGDTGSVSSLSNLVSNVGVVASDTTGVGTARGGLAATQYGADKGIFGFGGSYSLTNLVSNVGVVATDTTGVGSGRNGLGACSFN*
Ga0052235_10494222F000060N/AMAQKFNTEFNYRYQVIGDTPWERIKTLKGFLEGRIRALALEEVNKLKHQAKLSKLNYLKNGGEGLEHEILELKAEIIELESHQGSLEEAFELTQDEIKILKKLIKELYVIAEPTRIKGYTDEEMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPKATKILEGNINPQLKIELKGVEDEVI*
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