Scaffold Ga0052235_1044472

Overview

Basic Information

• Taxon OID: 3300003147
• Scaffold ID: Ga0052235_1044472
• Source Dataset Name: Planktonic microbial communities from North Pacific Subtropical Gyre
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre, Hawaii
• Coordinates
  • Lat. (^o): 22.887959
  • Long. (^o): -158.027466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002187	Metagenome / Metatranscriptome	585	Y
F040138	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10444724	F002187	N/A	MKFKNGVFVDQKFMETIQKCNEYEDWEPKGAYWFNRLVKKLRSAQEDYNDTRTKLVKKYADEPDKDGNVKVAEVHIPAFSTAMGELMEEEFEIDGIKPIKFPEKLKLSPIEMGLMEEVVDMSAFLDDEDD*
Ga0052235_10444725	F040138	GAGG	MPFYDFACKECKILVEDEFFKIADEKNVKCEECGEQMEQVILKAPGLSDPGGIGQKWTNDGYQMSDGSGNLRNVTKKFKKGKQVI*