Scaffold Ga0052235_1033262

Overview

Basic Information

• Taxon OID: 3300003147
• Scaffold ID: Ga0052235_1033262
• Source Dataset Name: Planktonic microbial communities from North Pacific Subtropical Gyre
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1768
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre, Hawaii
• Coordinates
  • Lat. (^o): 22.887959
  • Long. (^o): -158.027466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044592	Metagenome	154	Y
F087942	Metagenome	110	N
F106169	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10332622	F044592	GGAGG	VQVGDLVKYKGILGIVTAPCAKRWAKPADVWVLWSNKRKPIVESGDFMELVNAAPV*
Ga0052235_10332625	F087942	AGGAG	MINVGDTVSVIDFPMYAPYYLGGELGMVIEASGSSVDVPEHYTIQFEDGSHILLGSELRQEVECENR*
Ga0052235_10332626	F106169	AGGTGG	VKIGDLVCLCPVAYPDTIGVVTQILMFDEYGPLHIEVLHNGQIDQWEADEAEVISERR*