NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0052235_1033262

Scaffold Ga0052235_1033262


Overview

Basic Information
Taxon OID3300003147 Open in IMG/M
Scaffold IDGa0052235_1033262 Open in IMG/M
Source Dataset NamePlanktonic microbial communities from North Pacific Subtropical Gyre
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location
Location NameNorth Pacific Subtropical Gyre, Hawaii
CoordinatesLat. (o)22.887959Long. (o)-158.027466Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044592Metagenome154Y
F087942Metagenome110N
F106169Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0052235_10332622F044592GGAGGVQVGDLVKYKGILGIVTAPCAKRWAKPADVWVLWSNKRKPIVESGDFMELVNAAPV*
Ga0052235_10332625F087942AGGAGMINVGDTVSVIDFPMYAPYYLGGELGMVIEASGSSVDVPEHYTIQFEDGSHILLGSELRQEVECENR*
Ga0052235_10332626F106169AGGTGGVKIGDLVCLCPVAYPDTIGVVTQILMFDEYGPLHIEVLHNGQIDQWEADEAEVISERR*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.