Scaffold Ga0052235_1030706

Overview

Basic Information

• Taxon OID: 3300003147
• Scaffold ID: Ga0052235_1030706
• Source Dataset Name: Planktonic microbial communities from North Pacific Subtropical Gyre
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1520
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre, Hawaii
• Coordinates
  • Lat. (^o): 22.887959
  • Long. (^o): -158.027466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005400	Metagenome / Metatranscriptome	402	Y
F008155	Metagenome / Metatranscriptome	338	Y
F018198	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10307062	F005400	AGGAG	VNQPQLGKNYRGFKDLTHTNMCYRCDYCDQPYQNIYWLRQLAIEYFICDNCKEYYKLTVEDLFKLQYVQNRQEWKDANSSARFFPYPLGFDT*
Ga0052235_10307063	F008155	GAG	MTPHEQQQHLAALVYDIGMKKQIEERVEAKYLKRIEYLVNANNELMYELEQCESEIVTIEKECYGRGV*
Ga0052235_10307064	F018198	N/A	MENKATIKVYIDGKEMLYSHQNIIGAINAFLPYLTNDDLDELMLRFHTLKDHRRQKEYLAHLKASQKSIQSNRHDTP*