Scaffold Ga0052235_1011144

Overview

Basic Information

• Taxon OID: 3300003147
• Scaffold ID: Ga0052235_1011144
• Source Dataset Name: Planktonic microbial communities from North Pacific Subtropical Gyre
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1345
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre, Hawaii
• Coordinates
  • Lat. (^o): 22.887959
  • Long. (^o): -158.027466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F004867	Metagenome	420	Y
F105372	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052235_10111443	F004867	AGG	MKKQIESIIKNDDLFKITFYPQNINHDFDEHQVQSTTRFAKWDNDCGFVFKPKTKNVSPFVKYFDVEKNGYRTATTKHRAVFISLDNQNYAWNGV*
Ga0052235_10111444	F105372	AGGA	MKRIIEWLDWNDARNTFPKWLWVMNGVVMGFAILVILFV*
Ga0052235_10111445	F004179	N/A	MMNKEIILEVKNVYGNELIYPSCHIANALIKLKDKKTFNKNDLDVFKSLGMNITWKARTI