Scaffold Ga0052242_1007440

Overview

Basic Information

• Taxon OID: 3300003142
• Scaffold ID: Ga0052242_1007440
• Source Dataset Name: Marine sediment microbial communities from deep subseafloor - Sample from 5.1 mbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Japan Agency for Marine-Earth Science and Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1391
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Source Dataset Sampling Location

• Location Name: Northwestern Pacific Ocean
• Coordinates
  • Lat. (^o): 41.1773
  • Long. (^o): 142.2013
  • Depth (m): 1180.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001614	Metagenome / Metatranscriptome	663	Y
F038153	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052242_10074402	F038153	GGAG	LAFLGDFGKIFLGGSTTADVGGAVGGFLGSPTIGRNIGESLSGGVSRIGEALDFNSPSAGVDSPATVAPVSQTSNISIPGIPSFVQGTRMQTQPQQAFIGGLPSLVGQGLGQAARVLSRPGVGGAVGGFGAGAVAEFFVDQFGQTKKLVITRKMQRDVKKLFMMSGGDFNMTAELYRMATGRSITGEQVVQIITRQFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLAPPRRPATRRRATSTTKVLQVK*
Ga0052242_10074403	F001614	GGA	MLEFFGTYGGHICGFGGFLAAIAALLYARARVAEFERSVHDIDWQVISELSLDVAKLKKAAQKWQNNENANVKVSQKDLLERALTERLIQQSGTVQPIRKMEM*