Scaffold Ga0052190_102581

Overview

Basic Information

• Taxon OID: 3300003129
• Scaffold ID: Ga0052190_102581
• Source Dataset Name: Olavius algarvensis microbial community from off the coast of Capo di Sant Andrea, Elba, Italy
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI), Max Planck Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1729
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Integument → Unclassified → Unclassified → Olavius Algarvensis → Olavius Algarvensis Microbial Communities From Capo Di Sant'Andrea Bay, Elba, Italy

Source Dataset Sampling Location

• Location Name: Bay off Capo di Sant'Andrea, Elba, Italy
• Coordinates
  • Lat. (^o): 42.807222
  • Long. (^o): 10.141111
  • Depth (m): 5.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011565	Metagenome	289	Y
F023283	Metagenome	210	Y
F088370	Metagenome	109	N
F099954	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0052190_1025812	F088370	N/A	MALPDESLVEDVWFAMWEVQTHARREKVPGPCRNFGKLANSCFEQWLTKPDVLRLYAEKVLADPFDPRETTRQLQHLHSCYATDTARACIRLISLLEKVSSK*
Ga0052190_1025813	F023283	GGCGG	MMVGGAVVNALAFTGGNYLFSSLGRSGEAEKERKRHDMAIEELQRAESEYQHKRRLRLDYLNQQLWAEQHSAQVFEDVDAAAREYWLVTGGDQEKLGKAPDAGAEPTLSEYYEPSASQKEYELLFITGGLALTGWAAFKFL*
Ga0052190_1025814	F011565	N/A	MSTPKDLGNLLYHSAVIGGLSVGYTMIGKKLFKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGILPANIIKTT*
Ga0052190_1025815	F099954	N/A	KTLTMDCEAQSLPTPTVVVPSATTMQAALVRQQKDPKKQEAGRRGAEARRKKMEALKAELIAAKETVSETIPKEHAEQHVKPVVEQRVWERSEGIPGWIMGISLAVIIGAVLYTRRSAPLERRQPHGPQERNTVVTTQSAAVQPSRALFDM*