Scaffold Ga0052190_102189

Overview

Basic Information

• Taxon OID: 3300003129
• Scaffold ID: Ga0052190_102189
• Source Dataset Name: Olavius algarvensis microbial community from off the coast of Capo di Sant Andrea, Elba, Italy
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI), Max Planck Institute
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6208
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes scapularis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Integument → Unclassified → Unclassified → Olavius Algarvensis → Olavius Algarvensis Microbial Communities From Capo Di Sant'Andrea Bay, Elba, Italy

Source Dataset Sampling Location

• Location Name: Bay off Capo di Sant'Andrea, Elba, Italy
• Coordinates
  • Lat. (^o): 42.807222
  • Long. (^o): 10.141111
  • Depth (m): 5.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F106038	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052190_1021895	F106038	N/A	VYGTTANVAGAAIRNFLIGSSLSNRIESGRPIRIRIESGSFAGPYQKATHAACEPVFLAVTEI*