Scaffold Ga0052233_107562

Overview

Basic Information

• Taxon OID: 3300003118
• Scaffold ID: Ga0052233_107562
• Source Dataset Name: Human gut microbiome from lean and obese individuals in Granada, Spain - Obese sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Institute of Catalysis, The Higher Council for Scientific Research (CSIC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1470
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Human Gut Microbial Communities From Lean And Obese Individuals In Granada, Spain

Source Dataset Sampling Location

• Location Name: Granada, Spain
• Coordinates
  • Lat. (^o): 37.17
  • Long. (^o): -3.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052233_1075623	F013656	GGA	MSKTYKEPNKSETETTINVLYSEKMISIYTNKVGLQKQLNKLIGEPTKEYKFKRSIVGSMWEIPLDDKIRISRLVLKANIFEL*