Scaffold Ga0052161_10028

Overview

Basic Information

• Taxon OID: 3300003081
• Scaffold ID: Ga0052161_10028
• Source Dataset Name: Acid Mine Drainage microbial communities from Carnoules, Gard, France, bin 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 247036
• Total Scaffold Genes: 244
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 165 (67.62%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Acid Mine Drainage → Acid Mine Drainage Microbial Communities From Carnoules, Gard, France

Source Dataset Sampling Location

• Location Name: Carnoules, Gard, France
• Coordinates
  • Lat. (^o): 43.303
  • Long. (^o): 6.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095037	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052161_10028240	F095037	AGG	MIELHERTRRISPTRIHEILLRYGAKSLVDPFMGLPTHLNYLKRHGIAVHGGDVLEWFVRVGEGIVVNDLTILRDHEVAEIVEMIPGRIYALDLFKAWEGVFFTEEQCVYLGVWFDNVRNLRSDGQTGLAILGLWRVFCYWLQKAQEPDEMPDLPPSELAWHYIRQTERWVASNMRRNTVRQCDVMHTLERQHADALLFAPPPRNALHHADPRIWMWEAWWQGNPYFTLEHAYRDTLFGARSNDPAAYHRSIAGIISEAGEYPLLIVATNELRLGEIEPIVRNARAKVECYAPNDSEIYLIATA*