Scaffold JGI24721J44947_10002492

Overview

Basic Information

• Taxon OID: 3300002966
• Scaffold ID: JGI24721J44947_10002492
• Source Dataset Name: Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26365
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.611006
  • Long. (^o): -110.440182

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063403	Metagenome / Metatranscriptome	129	N
F084856	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24721J44947_1000249214	F084856	N/A	MERGDAMSDLSNLKIVTHLYTKEHAEALSLTLSEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSRNCSPVRYVKPETQTDRKSSKPSGRR*
JGI24721J44947_100024922	F063403	AGGAGG	MEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDDRFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSIITAFRLPAEDDDGNFVQAIYNAEPLPDLPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGANQNSTDLLEQGSSGMSGDQ*