NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24721J44947_10001626

Scaffold JGI24721J44947_10001626


Overview

Basic Information
Taxon OID3300002966 Open in IMG/M
Scaffold IDJGI24721J44947_10001626 Open in IMG/M
Source Dataset NameHot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32053
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.611006Long. (o)-110.440182Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F080678Metagenome115N
F086364Metagenome111N
F088087Metagenome109N
F092976Metagenome106Y
F100012Metagenome103N
F104114Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
JGI24721J44947_1000162617F092976GGAGGMMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWVDIAWDAESDHEFLLVECRSGHLFRVDEEFWLFDCDDYSDAGVYVPSED*
JGI24721J44947_1000162620F088087GAGGMKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFINGGDE*
JGI24721J44947_1000162621F080678GGAGGMFVKKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSALPYNLRVEHFLKCPFLHGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFSQGR*
JGI24721J44947_1000162623F100012AGGAGGMDREKVLQALREAQAEYNIEDLDRFIKQAWEEVDIIDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFVAVHPETGQCLTFLKDPVYSWESRISFSARIKSADDAVDAVMSLAELIEQNLKSRAE*
JGI24721J44947_1000162624F069506GGAGGMQLTHTEEQIKQAIEATWQELLQEADAEDYSLEEYLEHYRKYWDDPDFPNDIPEIIIRAVDKLIGKPLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIVRLVIKLLDQIQSALADA*
JGI24721J44947_1000162625F086364AGGAGGMEREKIVAALEEAFAEISGAEYEDEPITFAEFLESFEKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVGVVFPILSIDDVVQVVEYFLRLVQQA*
JGI24721J44947_1000162628F104114AGGAGGMERLRLWRSMTQDERFTAAEKELKDAIVARYDEFADEWSLSRSVEDASPRTLAEIIIQTVENLLGLQWQLEWDYDTDADDMVWSSGATAYWFKVSDPETGYVLTHKTSGVTGERLRYFKLIETFGDAAQAVVDLADIIAEKLLVVRSQVQSLKEVQ*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.