NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1652J44930_10071668

Scaffold JGI1652J44930_10071668


Overview

Basic Information
Taxon OID3300002963 Open in IMG/M
Scaffold IDJGI1652J44930_10071668 Open in IMG/M
Source Dataset NameFeedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - starting DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)859
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca

Source Dataset Sampling Location
Location NameNewby Island compost facility, Milpitas, CA
CoordinatesLat. (o)37.454581Long. (o)-121.928712Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101423Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
JGI1652J44930_100716683F101423AGGAMFAKSKPKSIERFRVGKGSPALKAFTYRILNKPYLDIRIFRGYKEITRIVTPDTGMRQFTVEGIGTFVVPTGDNLLRQYYNRHCIYLNYNIQNSNPGVPVEYEKWTEYEYPPLSPEEYQVLLEAQTVADLLKETEKDMKWIWYLLIGGIVLVGLIMLMGGA*

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