Scaffold JGI26062J44793_1009291

Overview

Basic Information

• Taxon OID: 3300002955
• Scaffold ID: JGI26062J44793_1009291
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9951
  • Long. (^o): -44.9972
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F009691	Metagenome / Metatranscriptome	314	Y
F015105	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26062J44793_10092911	F001504	N/A	RRRVGVLRIMSYDTEHYYAVQTFLEDDELSKIWNIIEIAMNREGYDVENAELSMRLYDQELTENIEHDMENLL*
JGI26062J44793_10092912	F015105	GGAG	MNLEQRKANMVYEIASLINDDPLSAPVLIEELVDIMFDEQIDHIEDVIVNHFGVEVYGEETVELLSQQ*
JGI26062J44793_10092915	F009691	AGGAGG	MKTELNSKDYVTFARRFVKDLVEDMDIEELRGIVTDRIHEEIQEGENNFGQKGAFEEMWGWSEDIFNSVAK