Scaffold JGI26062J44793

Basic Information
Taxon OID	3300002955 Open in IMG/M
Scaffold ID	JGI26062J44793_1001948 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002955 Open in IMG/M

Scaffold ID

JGI26062J44793_1001948 Open in IMG/M

Source Dataset Name

Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2913
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2913

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	-37.9951	Long. (^o)	-44.9972	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

South Atlantic Ocean

Coordinates

Lat. (^o)

-37.9951

Long. (^o)

-44.9972

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001479	Metagenome / Metatranscriptome	687	Y
F007173	Metagenome / Metatranscriptome	356	Y
F014025	Metagenome / Metatranscriptome	266	Y
F020546	Metagenome / Metatranscriptome	223	Y
F058219	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26062J44793_10019481	F001026	N/A	MALHKLVLDDMELTALITHLEGQSEMMCESRANSSYPDELPDREEVLLNLVYAKAFTIGWDADKNPNNDFDLIKNQDRIYQNKLYPQVYGQTK*
JGI26062J44793_10019484	F014025	GGAG	MKLDNYELSTLHYTLCYYIGSEKTRLDEDEIEWLHLLREKVDSIMVSQAKYDMECG*
JGI26062J44793_10019485	F058219	AGGAG	MSKSKKQLKKDLKYLKKHLDDNKDINQIIEHTTKIGISSEYFCEEFVFIPDGETPEECARFHDVEYLDITEFNYHHWISNKMEDY*
JGI26062J44793_10019486	F020546	GGAGG	MTTKTDPNQNFTINEFYIKVKGDYGKEKTVRVNDMGDKLLTLITDLGWDYQRMSCSGREVYDEIQQLLGTITEDEVYMEI*
JGI26062J44793_10019488	F001479	AGGAG	MSKEMLFLCDVYDAWLSKNKLPHRCASEILYGVDTKGRLTQNQSYWLESFISTWDVIAENT*
JGI26062J44793_10019489	F007173	AGGAG	MQTITKAKISRNNLMEYIHEDRDLLMGLQDDLSDMLFATGKYTITLDEIVQNYMPYIPVYLIENEDEIKEVYSDRIDEDDNLFIFDRDRTPNEITLNVEWID*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI26062J44793_1001948

Overview

Ecosystem & Geography

Associated Families

Sequences