Scaffold JGI26062J44793_1000808

Overview

Basic Information

• Taxon OID: 3300002955
• Scaffold ID: JGI26062J44793_1000808
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4541
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9951
  • Long. (^o): -44.9972
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F001419	Metagenome / Metatranscriptome	698	Y
F002490	Metagenome / Metatranscriptome	554	Y
F034213	Metagenome / Metatranscriptome	175	Y
F084358	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26062J44793_10008081	F000802	N/A	MTIDEYKDLLLEDELNIGYDVEEDDLPEELEEESYIDGLLTAGFHAVDASEMFGEEVVGYSLY*
JGI26062J44793_100080814	F084358	AGGA	MTLIDFDKKELLDISHALLSYRTDSTVIREGGLTDEQKERYKRLTSLIEKVSQLKNVCDCGGKTN*
JGI26062J44793_10008086	F002490	AGGAGG	MEMKQVKAEIKDYVRDHYKYYGWYPYDVEVGDVVYTYEQYMDILAMTL*
JGI26062J44793_10008088	F034213	AGGTGG	MGAKQKIQNLKNFASLDKSFKEWLTTCPRDYIWQIDDVTKNHEGTFTFRRTNGL*
JGI26062J44793_10008089	F001419	N/A	MNYEEILKCYEGETDIHANTSFEFGLMNDLYYQLFYSYPEVD*