Scaffold G310J44882_10005680

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10005680
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4246
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F023777	Metagenome / Metatranscriptome	208	Y
F034448	Metagenome	174	Y
F104347	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000568012	F034448	N/A	MHVNTWTLPRPPEEALNQCHAVYINDPVFRMWAMKKWCREQNLSLIWSELVDTTDVSAFFDEACAFYFIDPADALMFRLRFI*
G310J44882_1000568013	F015302	N/A	SKDEYYADTAARLDTIIGGDTQHFLRLQRVKNEYDELARAVPVGQGFLTFDDYVREYYGVKLQFDGDNVTLAYSIVDEKKHLMFILKFNR*
G310J44882_100056802	F104347	AGGA	MNSFKQWYLMNQKEITWFLIGFMVFAGLQDLSVGNYVGAAISFGLAYINYKLN*
G310J44882_100056807	F023777	AGAAG	MAVKSWFLSVVDTATHKPVIHKMFFTAPEMNKFIKEQKIVEEYKKPQYYIVKENY*