Scaffold G310J44882_10004929

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10004929
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4696
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035607	Metagenome / Metatranscriptome	171	Y
F048062	Metagenome / Metatranscriptome	148	Y
F094805	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_100049291	F048062	GGA	MSPSFTTNVLEPEEVNGEDAGYVPFYNDGAETGIVPGDEPHKQEVWPYDGTNPALVPYQQGIVAAVQESRERIYDSLIVVDRLEKMGMVNPDDRAKHLAKFEQMDSAKLAGFVASLDMLEESGARQPRSQKVASGSNRLPEMGRLTTASTVKRQDISSDDWLMTL*
G310J44882_100049294	F035607	AGGAG	MAKTVSRSGDNGESTPVPVIDLGGHIEDHKADPADLSAARVATVTPTSFKGMKDIKTGDWIENLMDSSTVFSSPKGSFKLAAAGIHGSIQPIQEEIRQDAFVLRAVQRGRIKFLTEDEAMDKIADLRDESDTSESHIDRLRESLGAGASENNGMYKIPLPDEAEPKGKAQSFEEIWASSTSTPKSKNV*
G310J44882_100049295	F094805	AGGAG	MSDDFKTTAEPVGIILPSGTAISGTTWSNQAWFNVWAPQTFAGTVVSGSAQPTLSGNGWQGQNNVGYVFQTDQYNSMREGSGR*