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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002933 Open in IMG/M |
| Scaffold ID | G310J44882_10004350 Open in IMG/M |
| Source Dataset Name | Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5137 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F017785 | Metagenome | 238 | Y |
| F086266 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| G310J44882_100043505 | F000934 | AGTAG | MADISTILAMSEQITIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRSLLANLRYYDKSLEQYLNFASTGWVNYIAYQGDMTSSQISACQWETASSGQNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPEYAVIGQYGTTVSLGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL* |
| G310J44882_100043506 | F017785 | N/A | MSQIIAPIQNTNNIRYADFVRIVTPSTEYRFSTAPTAITVSAVDSQPFDGLGQLIGIGKVQRDIKSTANQTTITLVGIDTALLGVVLNGNLKGAQITMWKGFFNTDGSLITSGGAGGLYQYFYGFINTFNIGEQWMEEVRMYVGTVTVSAANIQMILQNRTVGRFTNDASWEYFTPGDTSMNRVATISTIYYAFGQNS* |
| G310J44882_100043507 | F086266 | N/A | MPLDKTVRFANKFDFDAIYKILEHFCHTHRFEILKDEAKWSRQYVGKQLSMILAGAGFILIAEDLSGVLVAMKAPCFFIEGEYSLHEIMWHSTNDKTSLKXFKKFIEIGTEMXKTGEIKEAHFSCFTDSDFSRYGATKLQNTWKI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |