Scaffold G310J44882_10004243

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10004243
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5207
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011059	Metagenome	295	Y
F054521	Metagenome	139	Y
F091218	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000424314	F054521	AGGA	MSDSIKDFPMEAAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQRQEWLKPAEPKPSPIVTG*
G310J44882_1000424315	F091218	N/A	TAKVVDYFRTVFPKIKVIYAEEGQYRIGKKPDPSKYVVPCIDERKLEKRKKK*
G310J44882_100042439	F011059	GAG	MSKMTYDQWEARYLSEEGSNYDREFRVQFISDYLLNPNLAAICRKHEVPYQTAVQWKAKNWWFEISEDILQNHKEELLAKQRRILEKTYDELGDRLENGDEQYIPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQITHVTIESLADKLRTITQDAIDVTPTESTPQPQTNLQIEQTHQEED*