Scaffold G310J44882_10003541

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10003541
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5944
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033624	Metagenome / Metatranscriptome	177	Y
F034036	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_100035414	F034036	N/A	MTTIAAIEGPDWVMIGADSQSSSEDGFSINIPNGKVFKNNNLVFAMAGSVRGINILEHDFIPPVPNGKDIDKYVTRQLIPAIRRSFLDAGYEFSKADSAVEHDNIIIVAVKGKIYCINEDYSWERNADNLYVAGSGEKFALGAMTALGGGTLIDDPVKARKIITKALQIASKYDSFTGGKITVNLIQEAK*
G310J44882_100035417	F033624	GAGG	MIEIKMSHGDLSFATIEAVARFNYNRAKGNDASQGHAPTWVEQVAREISGCLGEIAIARWQDKYPFALFEERKMGDVGEFEVRTTAYSTGKLLINHDDDPSRKYLLVTLPTHYTACIHGWMYGYEAQTQQFYNTSMRAPVFAVQQQYLKPPETIYG*