Scaffold G310J44882_10000827

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10000827
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14608
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F094793	Metagenome	105	N
F096503	Metagenome	104	N
F100258	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000082715	F096503	AGGAGG	MIKMSIRTGRKITWGAAAIVALYVDVTSSGGISFWMAVYGLGTAVTVAILLAFITKR*
G310J44882_1000082720	F094793	AGG	MNNRDRISRDVERSLKTLNTLTPALIADLVRRAGTRATPERTGAQGPKGKGSHSDPTLASVIRKMSGDDAPDPIYEAVKTLAQTLSDIATLSQLIDQQIRFVTEGAEREKESTIAHCQACEREVSRTPKDRIRSGYCHACYAKYIRQGRPYRLAFEAKIKQEISETLQNS*
G310J44882_1000082727	F100258	AGTAG	MITIEQITKGIQVEMRKVSQYVDDLAVAGDVAAEADADWEITKAKASLLIAAESIEKLTVSEIANRTLIQCEAEYRAYVIAKNRHDNIKHALRAAQSRLDALRTLMTSLRVAGG*
G310J44882_100008276	F008860	N/A	VSLLEQSTTKTPVPGDIVFAHSFGWMAKCIRFAEFLRWRSGSYWNHVCVVSRVDQDGTAYVIQAQLKGVAEARLDSVGQYILVEPPYRVNRNKVLAFSKMQVGKKYGILSIISVVFDIISPDWFWSMRAPNTWICSAVTAEALRYAGWLADWSDVYCVTPSQLFAALVD*