Scaffold G310J44882_10000028

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10000028
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 69201
• Total Scaffold Genes: 149
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 94 (63.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035736	Metagenome / Metatranscriptome	171	Y
F098539	Metagenome	103	Y
F099313	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_10000028118	F099313	AGGAG	MNLNFTKYMLDFYGPNGIYDYGFTSKQIILATQLYKVCMEEDFGQTEFEGDSVDRERVRDIILSFREKEVA*
G310J44882_10000028128	F035736	AGGAG	MTTVTYNIGDDVSHGIGGDRYYDGKIVRMTKRFIFTDSGRQYTRKVAKDGREYYTQTGCKYCYLMPGKHEYMDPSF*
G310J44882_1000002896	F098539	N/A	MSVTIRVPWNYNDDTAREWTKLLAWTVETYGLPGENVSFNPTHDWMDFTFNNEQDALMFQLKTGGVRRYKEEYTAEFVGGLINGL*