Scaffold Water_104869

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_104869
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2064
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027353	Metagenome	195	N
F043088	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1048691	F027353	AGTAG	MTKLVENKIPLSFRGIADKKVLFRLFNPKRNKSKSFNIYEKARLSSTIKQAFDNDYRKVDIEYDTTANLRFKKANVLIDVPQYINKSKKKLYEEMLSSNREFIKKNKVPQSIIDNQKYFEQIVSQL*
Water_1048694	F043088	AGGAG	MKRLDGIYRGYSIFEKDKVWKIELEGKTITTFNKILNVDGKASCMNEIDRIKREDYHERERNIQRVDAQVKATRDGGV*