Scaffold Water_104857

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_104857
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F053386	Metagenome	141	N
F075435	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1048572	F053386	AGGAG	MYKETINDHMTAVGDTSSMFIVIEYNNPTYPETTVYNIAHGADLRLGNGKPNMLSDVMDGTTLVTYDNLKDAQKMCQRLNYGYESTKRLIETGSIV*
Water_1048575	F002281	N/A	MKFNYPKIAEHLGVPLRGNETFTELLEIEKQVKEHKERQERIAEENANIQRIDAQTKKYWGK*
Water_1048577	F075435	GGA	MKTFTVIGRVWTRDHGYLATRCSMNFEAKNKTRAIKMARELRNAGKNFISCNNFVAYPTDCPEENPLAMSWEERQMERDYWKQEERYSDDPPIVPQGYYD*