Scaffold Water_103516

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_103516
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2547
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F050749	Metagenome	145	N
F066148	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1035161	F066148	AGGAGG	MSNHLSEVAEGIIQACPTQLNPDEMSTLIAYMVWSYGMQGDWDDMLPKIVRCINLDDGHARTVRVANRDAIKFLDKVREDVSNARRS*
Water_1035163	F038862	GGAG	MSDKAWHISYLSAIVGPCAATTDDGCMAWEDTEKSDFVMRLLDRDNDAKNLLLVIQPEMNELAIYTLTGYCVANDLPYMIKDWDTLSAEMYDIGQKEAQKTRH*
Water_1035165	F050749	AGGAG	MLESRFLDKAAAIELLSNNWHKNRKIHRGIKDQHVKDLAFKITQGRWVVDAMETPILIDTDGILYNGQNRCMAVILADQGVVVQCRIESPEECQRLYASLDLGKARSIADITGLNQSNIVQPILYLMRCAGLDGRLKDEAVVSRIADTYMGDILRHFDQNTRWVKNNRCFNSVQFKAAMAYCVHRRVLPDYEAISVLEMLQNNKDYHWPSMYLNYREQIMFPNGKLNTSGKVVANDKFCRGVYLIERRMKHQSKIQISSGFLDDLASNVRRVISLAAAE*