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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002930 Open in IMG/M |
| Scaffold ID | Water_102740 Open in IMG/M |
| Source Dataset Name | Estuary water microbial communities from Pearl Estuary, Zhujiang, China |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2981 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pearl Estuary, Zhujiang, China | |||||||
| Coordinates | Lat. (o) | 22.67 | Long. (o) | 113.71 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033250 | Metagenome | 178 | N |
| F045425 | Metagenome | 153 | N |
| F070658 | Metagenome | 123 | N |
| F080627 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Water_1027402 | F033250 | GGAGG | MSTSPRCASSPPSSRPVGTIDLEVLRPVLEQHAASMVEDARTGWPVDTGICREAWEAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSPRLVYTEVEERFTLNLIPALQADIALTLAESMRG* |
| Water_1027403 | F070658 | GAG | MSVDLDIELRSVTRHLKRSHGEVRVLTAGEFMVLLAGSQDILLQLRQGWPVVTGRSRAGWSVEPIQRPFLGYRVSNGIDYSQYVHRSGEGPDPLWQEQMLIIRDRILPPIVERLNRTITETERYSQPAQEQQPQRSLFLAKPQQQTVDLFSQVRRLRRLVRRR* |
| Water_1027404 | F080627 | GGA | VTYATALTAAIARLVAAGLVECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARVDGLRVTARFTVQLGHELKPGAGLAAPSQALQDLHSAQRYLIQPGTSLTTEGALTFGPVTTTRLQGGAYMIQAFELGVTFNLDMSAP* |
| Water_1027405 | F045425 | N/A | VELNGSAPTVSAVTFSLWDSSGTVLVDAGSASESGGLLSFTVTASVTTGQSLGQGYLLKFSATIGGDRHDFYNEAALCLSRLYPPVGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELTSRLFSEGLPFWRMRTPSALRPWLTAQALVFALDDLALTLGDGGPYRDEARRIEQTLPRLYGQIRSRMDTDEDNTVSEEQQAASPVIILSSGRMGRYTR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |