Scaffold Water_102439

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102439
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3205
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014143	Metagenome / Metatranscriptome	265	Y
F017452	Metagenome	240	Y
F029105	Metagenome	189	Y
F082340	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1024391	F082340	AGGAG	MKFEMSIGYIENEKITVETWDFEKIEIIKSFVEFQEEHGWAVDYEAIDC
Water_1024395	F017452	AGGA	MWRKREIMKTDEDDEFDRIEHEAQMKLGQPYHFNVYVLPSQRNMVLEEVAHEFESLRIAFGDTAASFAQYVREMKHD*
Water_1024398	F014143	GGAGG	MNTRYLKQVRRIFSQYDAPPEVIRSYQRQWVRSVRQLGDKWLIAKQIERIEQ*
Water_1024399	F029105	AGGA	MKHNLQHSFQDAVSFDDGETVQVVTVGYDHLPEEINYPHDHNFAEMFDVFVFDENDKDITYDIPNDEYKRLMDEAKRHFYTCEAV*