Scaffold Water_102416

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102416
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3224
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1024162	F048834	AGGAGG	MAIPAVDWAAALDAYVAGDRAEVVPPGWHTKIEISKQWGKSDVYTNKILTRMIKAGGAERKVFSIRIKICNRGGKIGYCRRVPHYRLTPIKTRKS*
Water_1024164	F026867	GAG	MSSGRLNDTAMKLRQENRALSLRQLGAAYGLGYVRIKQMQALPGFPLIAGKIIPSDFDRWRLMQTTGLNSLHRANRPHSAAGKARELTSRSDSRVAWRQIASNLKAEAWLHELHAGSENSDV*
Water_1024166	F042872	N/A	MTPQSIINQIEEGNKTVGSNPTPSESYHYNYLRRSGNTAVITEPKKKHYQQHSLLIRGGYTAEPAYHPNPSVARMWSAQR*