Scaffold Water_102400

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102400
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3233
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019450	Metagenome / Metatranscriptome	229	Y
F086384	Metagenome	110	Y
F104727	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1024001	F086384	AGAAG	MKQAQLLAHWRKRRTGARYSPKELADEIVAACGSGFTIEKAGALVGVNASTIRTWAQRKPDFARRVETSRKKHELSLLRDIELAGQKSWQAKAWMAERIYNHAQPSARLAVTQEHTHGISSNLASLLAGIAVRKKTQSEKIVQSANDALEIETKQLTNITPNHLSHNRYSINKDQVVDAQQDFSKNIPK
Water_1024005	F019450	GGAG	MANIKHSYAVYNSVGQFFARFTSYARALRWAQRNGMEWSADIRKERENTK*
Water_1024006	F104727	N/A	MKNTKEKHYIAEVQEQHGEYEHTTKYLFKTAGDPFEYAENITKTWYDAEAEKDEYSDGYWQNGEIISSVGEVKEVSIAHYKVLKKYLSVL*