Scaffold Water_102173

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102173
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3435
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025148	Metagenome / Metatranscriptome	203	N
F050340	Metagenome / Metatranscriptome	145	Y
F053650	Metagenome / Metatranscriptome	141	N
F062719	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1021733	F062719	N/A	MTKQEILNHPIWTSRLIFNAKLLFGKPWKDCDEDEQLAVRLRSLGIDKNEIQ*
Water_1021735	F050340	GAG	MKHEEFDKMMGHAMDHVKELVETAKEIKRNRIIALNQRDLKENGIEND*
Water_1021737	F053650	AGG	MKKLIRKRRHMAFVRRYIVELQWDSLNTMLVASKTQWNDDVVKALDNNARLIRKYERRRRWLRF*
Water_1021739	F025148	N/A	MANVDFAKGHGTILSGSVKYARLTNESGPDQMSEKYGCELHLDDASAKQLTDLKVLDHVRSKDPQGNFKYENPVVRVKSINIPKGYLANRQIFDGLIGDESEIRANVWIKKWEYNGKKGLSVWLSAYVITNLVEYKTNDSDALFEGLPDVGELVPGQESVPTSKPNVASQADAFGDADGDDLPF*