Scaffold Water_102107

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_102107
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3516
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018831	Metagenome / Metatranscriptome	233	Y
F018932	Metagenome / Metatranscriptome	232	Y
F031501	Metagenome / Metatranscriptome	182	N
F050306	Metagenome	145	N
F077316	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1021071	F031501	GAG	MTSELLDLFEEAKRIIDKQEQLIKLQQSLIKTMQQGLQGVELNELLLKKQLADLQEELMTVTNDYIDVMGGGEKV*
Water_10210712	F050306	AGAAG	MSKYYEIKKREDVTVKNMLEIYGKSSKYRKKITWDAFYLITGWTHIQITKDERQK*
Water_1021075	F018831	N/A	MKIIASVSIEVRVDDTELLDDAKERAIDELIDSLEDWINNNGIPPIISIEYKLPEIDENQQFLN*
Water_1021077	F018932	N/A	LSNNRATRHQEIWKRTKNGLELVLPKKIKTDIGFQLMFGHREDYRVEEKRIEDNANRYQAKTYLSIEDFKQHI*
Water_1021079	F077316	GAG	MKKQSNDTNKRLMSWINNRLFKTLNPKDWEIESILYIYNNEKDSNIRGRSEQGKHSSRRNS*