Scaffold Water_101806

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_101806
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3867
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F017479	Metagenome / Metatranscriptome	240	Y
F034923	Metagenome	173	N
F063695	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1018063	F034923	GGCGG	MTNNDKLLIICLIGAGISFIVWALQSYKEAYDRGHRDGWHKGRAVNRADFWQE*
Water_1018064	F063695	AGGCGG	MKITAKDFDNLTDTVMGWKGNDWELQADRFSDKPAFDWLVVCWYDTVIAMIMARSFLEQNHHAFQESYDHNMESWILLTNYDSFNMAVSA*
Water_1018068	F000706	GGA	MTQSDFFTLYLGTLAIIGGLSGYVITHLLSEIKRLNSRVDEIYNILLDR*
Water_1018069	F017479	AGGAG	MNELKTAAGSWARAFLVAVISMAAAGVTDPKALIAAGIASILPPVLRYLNVNDPAMGIKK