Scaffold Water_101668

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_101668
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4059
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F007750	Metagenome	345	Y
F021299	Metagenome / Metatranscriptome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1016681	F002374	GGA	LLYVGIFLASVSFFLSALTCVRVIKLLNSVEGLDWATVATLTGDIGTIKKSIQTLNNRINGLNTPKLNDELLNYAIKQQNGAMRPPTSDLGG*
Water_1016683	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTTATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGVFIGG*
Water_1016685	F021299	N/A	VRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNGAMHPPTDKLGG*
Water_1016686	F007750	AGGAGG	LAFLGDFGKFFGLGSSEDVLGQAGQAVGSIFGPEYAIAGREVGKATGRATSNLAGDDNISPLSTADQAREQSAVPVSVIGNRPQETSTMTGTTGMVTQAGFGFLPQIATGVGRFLTSKSGQIATGLGTGVAFGQGFNSMTGTKRTTVLTQSRRNKAKVRQLVNFMGIEGTANFLSQSMNVNVTPNDVVNLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRTGSTTLIKN*