NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_101583

Scaffold Water_101583


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_101583 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4190
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009856Metagenome / Metatranscriptome312Y
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F063642Metagenome129N
F091789Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Water_10158310F091789N/AMISLHPYQCKTWSEAKHEWGWLMRSRGLQQINRKPPTGYGEAPDLLKGKVEGPGFVIYGSGYDPRETTHTITSGSAIYGNRYCGHLNPF*
Water_1015834F009856N/AMKYWFEVEDAQRWGLSAAAVLAHLKYWIDRNTAAGEEPCMTQGIKEMSEYLPFLSASQIKRALGKLEAVGAIYKSQNGFDRRGTFCLGTNPAHALDESVPSMVQNRPIDEPNLARVHIETNTSKRTKSTAREELDYERPTEEQVKEYFRDIGGADVADQLGQEFHTHYESTGWYVSGTPMAKWKPKARSWLSRHRNKQSNERRKGFNPSGFTPDGLKDFIDNG*
Water_1015835F048232GAGMDGRIIRRMLNAETLPYEERVSRIMFLREHRRNLLRAYCEDDVTKREKDKLRQEIARVQKALKKLDPDGMFPP*
Water_1015837F036970AGGMTKYKRWFTSVNRAIVAEMAMQKKTQKDLAEVLQIHPVTINRKLKDPGTFFLSELGQICETLNIDLKNPPNYGTSAN*
Water_1015838F063642N/AMEYTTTQLFDEVIQLATPDCVKRRDMTLVRKLKDLQNYTQRLEKIAEDAVDILKETK*
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Institute for Fundamental Biomedical Research
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