Scaffold Water_101140

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_101140
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5106
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F007522	Metagenome / Metatranscriptome	349	Y
F021981	Metagenome / Metatranscriptome	216	N
F048985	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10114012	F048985	AGGAG	LPNTSQKTVTTTATLLVTANRADQLVYLHSSSGIIYIGNSDVTTSTGYRMDNGDKLSMQLSDNEALYGITSSGTATMMVMATVN*
Water_1011405	F021981	N/A	MPTTTEQLFTNATNLVHERGVVYGHAIYNMERISKSVSAYIDFPIMPHDIPIINVLQKISRLAESPGHEDSIVDICAYMAIYKMCIEAEKDNEFQWREGE*
Water_1011406	F007522	AGG	MTLKEAGLWWVATMVAIIWTYGVLQNAKQTHYWRGRKDGWDMHRRMIQNKTDANNN*
Water_1011408	F002044	N/A	MANTRKPSKRKKINRRIVRHSPEPLSKLDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDND*