Scaffold Water_101115

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_101115
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5185
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F011527	Metagenome	290	Y
F019560	Metagenome	229	Y
F024421	Metagenome	206	Y
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10111511	F004220	GGA	MVEKDKLDWAYYFKSLLGGSTAPGWIRVCSKDMNEGFSVFTKQTRVKEHYKKIADTGVEFYTCDDDDLDKEYGMYYGNLDFDPLEIMAFRSGHTKMFYKENGKWKPV*
Water_10111512	F043623	AGG	MFKRIKKTEDDPSLKEAQTFVKGWVERVVLSTGVLLVDEEALLKQGIKKNKAASFLANKDGYSEILGPAIFIPHEIKSEWY*
Water_1011152	F019560	AGGAG	MQKVKIKFSIITPCEKEYEIVDQDLWDFGKDRFTEIAKSDNCQEIFSDERIYGLKPIENSFYEDSPNREVHKVENVVIDGKNVWY*
Water_1011155	F011527	N/A	MLVYFQFRRCGYYARGLVEADSLDAASRALWAEHVGTFKWEDQTNDMPENANYLTIEEYKYERSSDGKTEPENETRSQVG*
Water_1011156	F024421	AGGAG	MSEALMEKLNQKMKLEAKWASELLSNGAVTVEMVNISKEVKTVEREIKEVVEHQ*
Water_1011157	F002594	N/A	MAKIPISRLNSAPEKYQQNEFNQLIEDLQDMVKILNSTYPKDQNDETERKNWFFMRGTG*